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- CODA
- installing
- (
- CODA
- installing
- )
- BUGS
- line example
- (
- BUGS
- line example
- )
- CODA
- running
- Using CODA to analyse
- BUGS
- software
- What is CODA?
- CODA
- default options
- (
- CODA
- default options
- )
- CODA
- exiting from
- Exiting from CODA and
- autocorrelation
- (emph, )
- plots of
- seeplots, autocorrelation
- burn-in
- Raftery & Lewis, Raftery & Lewis
- convergence
- strategies for detecting
- A cautionary note on
- cross correlation
- (emph, )
- plots of
- seeplots, cross correlation
- defaults
- seeCODA, default options
- density
- estimation method
- Plots
- estimation method
- Plots
- estimation method
- Plots
- plots of
- seeplots, density
- format
- seeinput file format, seeinput file format
- Gelman & Rubin
- (emph, )
- shrink factor
- Gelman & Rubin
- shrink factor
- Gelman & Rubin
- trace plots
- seeplots, Gelman & Rubin traces
- Geweke
- (emph, )
- window width
- Changing the window size
- Z-scores
- Geweke, Geweke
- Z-scores
- Geweke, Geweke
- Z-scores
- Geweke, Geweke
- graphics device
- Plots
- copying
- Displaying multiple graphics windows
- crashes
- Plots
- hard copy
- seeplots, hard copy
- Heidelberger & Welch
- (emph, ), Specifying the precision for
- input file format
- BUGS
- Using CODA with Gibbs
- S-Plus
- Using CODA with Gibbs
- kernel density
- seedensity
- mean
- seesummary statistics, empirical mean
- multiple chains
- Generating BUGS output for , Gelman & Rubin, Selecting chains for analysis
- pooling samples
- How to plot each , Combining chains to produce , Combining chains for cross-correlation
- pooling samples
- How to plot each , Combining chains to produce , Combining chains for cross-correlation
- pooling samples
- How to plot each , Combining chains to produce , Combining chains for cross-correlation
- numerical standard error
- Statistics
- asymptotic
- Statistics, Heidelberger and Welch
- asymptotic
- Statistics, Heidelberger and Welch
- batch
- Statistics, Setting the batch size
- batch
- Statistics, Setting the batch size
- naive
- Statistics
- parallel chains
- seemultiple chains
- plots
- autocorrelation
- Autocorrelation plots
- cross correlation
- Cross Correlation plots
- customizing page layout
- Controlling the page layout
- density
- Plots
- density
- Plots
- Gelman & Rubin shrink factors
- (, )
- Gelman & Rubin shrink factors
- (, )
- Gelman & Rubin shrink factors
- (, )
- Gelman & Rubin traces
- Plotting Gelman & Rubin's
- hard copy
- Printing graphical output from
- postscript file
- Printing graphical output from , Producing a postscript file
- postscript file
- Printing graphical output from , Producing a postscript file
- trace
- Plots
- trace
- Plots
- trace
- Plots
- Z-scores
- (, )
- Z-scores
- (, )
- Z-scores
- (, )
- postscript file
- seeplots, postscript file
- quantiles
- seesummary statistics, empirical quantiles
- Raftery & Lewis
- (emph, )
- reparameterization
- Raftery & Lewis, Autocorrelations, Cross-correlations
- scale reduction
- seeGelman & Rubin, shrink factor
- shrink factor
- seeGelman & Rubin, shrink factor
- standard deviation
- seesummary statistics, empirical standard deviation
- standard error
- seenumerical standard error
- stationary distribution
- Gelman & Rubin, Raftery & Lewis, Heidelberger and Welch
- summary statistics
- Statistics
- empirical mean
- Statistics
- empirical quantiles
- emph, Selecting the posterior quantiles
- empirical quantiles
- emph, Selecting the posterior quantiles
- empirical standard deviation
- Statistics
- iterations used
- Selecting iterations for analysis
- thinning interval
- Raftery & Lewis, Autocorrelations, Selecting the thinning interval
- trace
- seeplots, trace
- Z-scores
- seeGeweke, Z-scores
Daniel Farewell
Tue Sep 14 16:08:04 BST 1999