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BSU Seminar: “Causal machine learning for biomarker subgroup discovery in randomised trials”

January 23 @ 2:00 pm - 3:00 pm

Free

Speaker: Paul Newcombe, GlaxoSmithKline

Abstract: Decreasing costs of high-throughput ‘omics, as well as new technologies such as the Olink platform, has driven wider application in clinical trials, for example to inform precision medicine strategies. However, data-driven characterisation of patient subgroups with enhanced (or weaker) treatment effect remains a challenging problem, particularly when searching over high-dimensional biomarkers. With growing recognition that traditional approaches (e.g. exhaustive biomarker-treatment interaction testing) are sub-optimal, several promising methods have recently emerged that combine machine learning tools with concepts from causal inference. In principle, they offer greater power through a combination of less conservative multiplicity control, and the ability to capture complex multivariate signatures which may be missed during one-at-a-time testing.

I will describe three causal machine learning methods for responder subgroup detection; the “Modified covariate Lasso”1, “Causal Forests”2, and the “X-Learner”3. I will compare and assess their performance in a modest simulation study motivated by real biomarker trial datasets being generated in GSK. I will then share some (anonymised) results from on-going application of these methods to detect and predict responder subgroups from transcriptomic data measured in two Phase 3 Lupus trials. Finally, I will close with a discussion on our experience of the benefits and limitations of existing approaches in this space.


This will be a free hybrid seminar. To register to attend virtually, please click here: https://cam-ac-uk.zoom.us/meeting/register/tZ0rf-qppzwsEtEisA_2ZCkA3KoJ3d53uW1P

Details

Date:
January 23
Time:
2:00 pm - 3:00 pm
Cost:
Free
Event Categories:
,

Organiser

MRC Biostatistics Unit
Email
research_admin@mrc-bsu.cam.ac.uk

Venue

MRC Biostatistics Unit
East Forvie Building, Forvie Site, Robinson Way
Cambridge, CB2 0SR United Kingdom
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