Anne Presanis
Contact
Anne Presanis – anne.presanis@mrc-bsu.cam.ac.uk
Potential PhD Projects
I am open to developing a project proposal around any of my research interests in Bayesian evidence synthesis for infectious disease burden estimation (see here), but am also proposing one specific project:
Efficient conflict assessment in Bayesian evidence synthesis models to estimate infectious disease burden
Estimating latent characteristics of infectious disease burden, such as incidence, prevalence and severity, requires the integration of multiple, disparate, data sources, in a single, often Bayesian, joint model. Evidence synthesis can result in greater precision than inferences from single datasets, if all included data sources provide consistent evidence on the parameters of interest. Often, however, unaccounted biases in included observational data can lead to conflicting evidence. Cross-validatory posterior-predictive checks to detect and quantify such conflict have been proposed (Presanis et al, 2013; 2017), but can be computationally challenging for complex models. This project will explore approximate methods such as INLA (Ferkingstad et al, 2017) and Gaussian mixture approximations (Chakraborty et al, 2022), as well as Reverse Bayes ideas (Held et al, 2022), aiming to build an easily accessible framework for computationally efficient and systematic conflict quantification. Such a framework will be applied to examples including estimating the prevalence of undiagnosed HIV (Presanis et al, 2021); and estimating the severity of SARS-CoV-2 infection (Kirwan et al, 2022; Nyberg et al, 2022).
How to apply
For details of the MRC BSU application process please see How to apply
To be considered for funding applications need to be submitted to the University of Cambridge application system by 23:59 (GMT) on January 5th 2023